GwasQcPipeline

Getting Started

  • Installing GwasQcPipeline
  • Running the Pipeline
  • Configuration Files

QC Sub Workflows

  • Entry Points Sub-workflow
  • Intensity check Sub-workflow
  • Contamination Sub-workflow
  • Sample QC Sub-workflow
  • Subject QC Sub-workflow
  • Delivery Sub-workflow

User Reference

  • File Type Reference

Developer Reference

  • Development Environment Set-up
  • Working with Documentation
  • Working with Source Code
  • Working with Test Suite

API Reference

  • API Reference
GwasQcPipeline
  • »
  • Overview: module code

All modules for which code is available

  • cgr_gwas_qc.config
  • cgr_gwas_qc.parsers.bim
  • cgr_gwas_qc.parsers.bpm
  • cgr_gwas_qc.parsers.eigensoft
  • cgr_gwas_qc.parsers.graf
  • cgr_gwas_qc.parsers.illumina.IlluminaBeadArrayFiles
  • cgr_gwas_qc.parsers.illumina.adpc
  • cgr_gwas_qc.parsers.king
  • cgr_gwas_qc.parsers.plink
  • cgr_gwas_qc.testing.data
  • pathlib

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