GwasQcPipeline

Getting Started

  • Installing GwasQcPipeline
  • Running the Pipeline
  • Configuration Files

QC Sub Workflows

  • Entry Points Sub-workflow
  • Intensity check Sub-workflow
  • Contamination Sub-workflow
  • Sample QC Sub-workflow
  • Subject QC Sub-workflow
  • Delivery Sub-workflow

User Reference

  • File Type Reference

Developer Reference

  • Development Environment Set-up
  • Working with Documentation
  • Working with Source Code
  • Working with Test Suite

API Reference

  • API Reference
GwasQcPipeline
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