GEMSCAN

Joint variant calling with GATK4 HaplotypeCaller, Google DeepVariant 1.0.0 and Strelka2, coordinated via Snakemake.

View the Project on GitHub NCI-CGR/GEMSCAN

Running on other compute environments

Other High Performance Clusters

Please follow the instructions on running on Biowulf and use the appropriate profile for your cluster. Some of the popular cluster profiles are available here

Other Cloud providers

Snakemake provides supports for other cloud providers, please see the Cloud execution section here We will also be adding instructions to other popular cloud providers here soon