Joint variant calling with GATK4 HaplotypeCaller, Google DeepVariant 1.0.0 and Strelka2, coordinated via Snakemake.
Please follow the instructions on running on Biowulf and use the appropriate profile for your cluster. Some of the popular cluster profiles are available here
Snakemake provides supports for other cloud providers, please see the Cloud execution section here We will also be adding instructions to other popular cloud providers here soon